wiki:Hicdep_1.50/TableLabResLvl2

Version 1 (modified by trac, 8 years ago) (diff)

copy from version 1.30

tblLAB_RES_LVL_2 - Mutations

holds mutations and positions of PRO and RT sequences.

Note: This table is tightly linked to tblLAB_RES.

Core fields

Note: Fields marked bold form the unique identifier for a record of the table.

  • SAMP_ID: The assigned sample ID
  • GENE: Type of sequence/gene (PRO, RT, GP41, GP120)
  • AA_POS: Position of the mutation in the sequence
  • AA_POS_SUB: Subposition used to code insertions
  • AA_FOUND_1: Mutation (Amino acid) found in the sequence
  • AA_FOUND_2: Mutation (Amino acid) found in the sequence (if more than 1)
  • AA_FOUND_3: Mutation (Amino acid) found in the sequence (if more than 2)
  • AA_FOUND_4: Mutation (Amino acid) found in the sequence (if more than 3)

AA_FOUND_# could be extended if mixtures with more than 4 amino acids are found.